DisGeNET - a database of gene-disease associations

List of associated variants

Human immunodeficiency virus (HIV) II infection category B1, C3854222

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs2910164	MIR3142HG ; MIR146A	0.447	0.880	5	160485411	mature miRNA variant	C/G	snv	0.71; 4.1E-06	0.70	193
rs7439366	UGT2B7	0.752	0.320	4	69098620	missense variant	T/C	snv	0.56	0.57	16
rs1045642	ABCB1	0.456	0.840	7	87509329	synonymous variant	A/G;T	snv	0.50		214
rs1126478	LTF	0.763	0.240	3	46459723	missense variant	T/C	snv	0.41	0.51	11
rs1126477	LTF	0.807	0.200	3	46459778	missense variant	C/T	snv	0.34	0.53	7
rs738409	PNPLA3	0.557	0.720	22	43928847	missense variant	C/G	snv	0.28	0.22	88
rs3745274	CYP2B6	0.672	0.480	19	41006936	missense variant	G/A;T	snv	4.0E-06; 0.27		30
rs14158	LDLR	0.851	0.160	19	11131368	synonymous variant	G/A	snv	0.24	0.22	5
rs1048412	ZNRD1	1.000		6	30064718	3 prime UTR variant	A/G	snv	0.15	0.17	1
rs2241766	ADIPOQ ; ADIPOQ-AS1	0.608	0.720	3	186853103	synonymous variant	T/C;G	snv	8.0E-06; 0.13		48
rs4149056	SLCO1B1	0.633	0.480	12	21178615	missense variant	T/C	snv	0.13	0.12	45
rs12252	IFITM3	0.695	0.240	11	320772	splice region variant	A/G	snv	0.13	0.13	23
rs1799864	CCR2	0.572	0.680	3	46357717	missense variant	G/A	snv	0.13	0.12	68
rs3740996	TRIM5	1.000		11	5680051	missense variant	G/A	snv	0.13	0.10	1
rs8177374	TIRAP	0.672	0.520	11	126292948	missense variant	C/T	snv	0.12	0.11	22
rs11045819	SLCO1B1	0.851	0.120	12	21176879	missense variant	C/A;T	snv	0.11; 4.0E-06		4
rs1801282	PPARG	0.500	0.840	3	12351626	missense variant	C/G	snv	0.11	8.9E-02	131
rs57302492	CD207	1.000		2	70831099	missense variant	T/A	snv	7.0E-02	8.9E-02	1
rs58542926	TM6SF2	0.630	0.440	19	19268740	missense variant	C/T	snv	6.5E-02	5.8E-02	42
rs4986790	TLR4	0.438	0.800	9	117713024	missense variant	A/G;T	snv	6.1E-02; 4.0E-06		223
rs4986791	TLR4	0.456	0.840	9	117713324	missense variant	C/T	snv	5.7E-02	4.9E-02	182
rs17235409	SLC11A1	0.653	0.600	2	218395009	missense variant	G/A;C	snv	4.9E-02; 4.1E-06		31
rs2395029	HCP5	0.790	0.320	6	31464003	non coding transcript exon variant	T/G	snv	2.7E-02	2.4E-02	12
rs1799972	OPRM1	0.827	0.080	6	154039561	missense variant	C/A;G;T	snv	4.1E-06; 1.7E-02		6
rs28399499	CYP2B6	0.827	0.280	19	41012316	missense variant	T/C	snv	5.1E-03	2.2E-02	6